STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA80290.1RNA polymerase sigma-70 factor, ECF subfamily. (192 aa)    
Predicted Functional Partners:
SEA80271.1
FecR family protein.
 
   0.889
SEA39929.1
FecR family protein.
  
   0.778
SEA83769.1
FecR family protein.
  
   0.778
SEA88517.1
FecR family protein.
  
   0.777
SEA23156.1
FecR family protein.
  
   0.776
SEA42704.1
FecR family protein.
  
   0.775
SEA21856.1
FecR family protein.
  
   0.774
SEA22773.1
FecR family protein.
  
   0.774
SEB10486.1
FecR family protein.
  
   0.774
SDZ90512.1
FecR family protein.
  
   0.773
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.