Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEA16429.1 | SEA83852.1 | SAMN05660909_01034 | SAMN05660909_03695 | Tetratricopeptide repeat-containing protein. | Iron complex outermembrane recepter protein. | 0.450 |
SEA19405.1 | SEA83852.1 | SAMN05660909_01069 | SAMN05660909_03695 | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | Iron complex outermembrane recepter protein. | 0.450 |
SEA75229.1 | SEA75241.1 | SAMN05660909_03296 | SAMN05660909_03297 | Cytosine/adenosine deaminase. | Cytosine/adenosine deaminase. | 0.723 |
SEA75229.1 | SEA83852.1 | SAMN05660909_03296 | SAMN05660909_03695 | Cytosine/adenosine deaminase. | Iron complex outermembrane recepter protein. | 0.500 |
SEA75241.1 | SEA75229.1 | SAMN05660909_03297 | SAMN05660909_03296 | Cytosine/adenosine deaminase. | Cytosine/adenosine deaminase. | 0.723 |
SEA75241.1 | SEA83852.1 | SAMN05660909_03297 | SAMN05660909_03695 | Cytosine/adenosine deaminase. | Iron complex outermembrane recepter protein. | 0.478 |
SEA83852.1 | SEA16429.1 | SAMN05660909_03695 | SAMN05660909_01034 | Iron complex outermembrane recepter protein. | Tetratricopeptide repeat-containing protein. | 0.450 |
SEA83852.1 | SEA19405.1 | SAMN05660909_03695 | SAMN05660909_01069 | Iron complex outermembrane recepter protein. | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | 0.450 |
SEA83852.1 | SEA75229.1 | SAMN05660909_03695 | SAMN05660909_03296 | Iron complex outermembrane recepter protein. | Cytosine/adenosine deaminase. | 0.500 |
SEA83852.1 | SEA75241.1 | SAMN05660909_03695 | SAMN05660909_03297 | Iron complex outermembrane recepter protein. | Cytosine/adenosine deaminase. | 0.478 |
SEA83852.1 | SEA83866.1 | SAMN05660909_03695 | SAMN05660909_03696 | Iron complex outermembrane recepter protein. | Uncharacterized iron-regulated membrane protein. | 0.636 |
SEA83852.1 | SEA96981.1 | SAMN05660909_03695 | SAMN05660909_04417 | Iron complex outermembrane recepter protein. | Protein TonB. | 0.450 |
SEA83852.1 | SEA98470.1 | SAMN05660909_03695 | SAMN05660909_04543 | Iron complex outermembrane recepter protein. | Hypothetical protein. | 0.496 |
SEA83852.1 | SEB04989.1 | SAMN05660909_03695 | SAMN05660909_04970 | Iron complex outermembrane recepter protein. | TonB protein C-terminal. | 0.450 |
SEA83852.1 | SEB12122.1 | SAMN05660909_03695 | SAMN05660909_05645 | Iron complex outermembrane recepter protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.450 |
SEA83852.1 | infB | SAMN05660909_03695 | SAMN05660909_04684 | Iron complex outermembrane recepter protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.450 |
SEA83866.1 | SEA83852.1 | SAMN05660909_03696 | SAMN05660909_03695 | Uncharacterized iron-regulated membrane protein. | Iron complex outermembrane recepter protein. | 0.636 |
SEA96981.1 | SEA83852.1 | SAMN05660909_04417 | SAMN05660909_03695 | Protein TonB. | Iron complex outermembrane recepter protein. | 0.450 |
SEA98470.1 | SEA83852.1 | SAMN05660909_04543 | SAMN05660909_03695 | Hypothetical protein. | Iron complex outermembrane recepter protein. | 0.496 |
SEB04989.1 | SEA83852.1 | SAMN05660909_04970 | SAMN05660909_03695 | TonB protein C-terminal. | Iron complex outermembrane recepter protein. | 0.450 |
page 1 of 2