STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA85602.1Predicted hydrolase of the alpha/beta superfamily. (462 aa)    
Predicted Functional Partners:
SEA65600.1
Thiamine kinase.
  
     0.687
SEA53140.1
Hypothetical protein.
  
     0.656
SEA66826.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
     0.453
SEA67521.1
Transcriptional regulator, TetR family.
  
     0.451
SEA11795.1
Protein of unknown function.
  
     0.437
SEB02376.1
Starch-binding associating with outer membrane.
  
     0.432
SEB01205.1
Hypothetical protein.
  
     0.429
SEB02368.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.411
SEB06467.1
Starch-binding associating with outer membrane.
  
     0.408
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.