STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA96707.1TPR repeat-containing protein. (636 aa)    
Predicted Functional Partners:
SEA96719.1
Two component transcriptional regulator, LytTR family.
 
  0.953
SEA88444.1
Two component transcriptional regulator, LytTR family.
  
  0.868
SEA98088.1
Two component transcriptional regulator, LytTR family.
  
  0.821
SEA28749.1
Two component transcriptional regulator, LytTR family.
  
  0.820
SDZ97151.1
Two component transcriptional regulator, LytTR family.
  
  0.819
SEB02703.1
Two component transcriptional regulator, LytTR family.
  
  0.818
SEB07078.1
Two component transcriptional regulator, LytTR family.
 
  0.818
SEA62605.1
Two component transcriptional regulator, LytTR family.
  
  0.817
SEA12372.1
Two component transcriptional regulator, LytTR family.
  
  0.816
SEA43602.1
Two component transcriptional regulator, LytTR family.
  
  0.816
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.