STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB09266.1Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (487 aa)    
Predicted Functional Partners:
SEA05374.1
Por secretion system C-terminal sorting domain-containing protein.
    
   0.820
SEB09274.1
DNA polymerase-3 subunit delta'.
 
   0.731
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.714
SDZ94279.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
   0.673
SEA07933.1
MCP methyltransferase, CheR-type.
    
   0.673
mfd
Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
 
   0.450
SEA13355.1
4Fe-4S dicluster domain-containing protein.
  
     0.434
SEB09279.1
Hypothetical protein.
       0.428
SEA54942.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
     0.418
SEA63592.1
Rod shape-determining protein MreD.
  
     0.411
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.