STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB10223.1alpha-L-fucosidase 2. (823 aa)    
Predicted Functional Partners:
SEA79291.1
alpha-L-fucosidase.
  
  0.771
SEB10213.1
Beta-xylosidase.
     0.745
SEB10198.1
alpha-L-fucosidase.
 
  
  0.729
SEA50714.1
alpha-L-fucosidase.
 
  
  0.723
SEA97208.1
alpha-L-fucosidase.
  
  
  0.715
SEA23702.1
alpha-L-fucosidase.
  
  
  0.714
SEA84736.1
Alpha-galactosidase.
  
     0.687
SEA21926.1
alpha-L-fucosidase.
  
  
  0.685
SEA97224.1
alpha-L-fucosidase.
  
  
  0.683
SEB10229.1
Sialate O-acetylesterase.
 
 
   0.655
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.