STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7EGP4Pectinesterase; In the C-terminal section; belongs to the pectinesterase family. (599 aa)    
Predicted Functional Partners:
A0A3Q7EAE8
Pectate lyase.
  
 
  0.747
A0A3Q7GE42
Pectate lyase.
  
 
  0.744
A0A3Q7HJ28
Uncharacterized protein.
  
  
  0.744
PGcat
Uncharacterized protein.
  
  
  0.740
A0A3Q7IS03
Pectate lyase.
  
  
  0.740
K4AYB8_SOLLC
Uncharacterized protein.
  
  
  0.739
LAT56
Probable pectate lyase P56; Might be needed during pollen development and tube growth.
  
 
  0.739
A0A3Q7F035
Pectate lyase.
  
 
  0.738
A0A3Q7F8U0
Pectate lyase.
  
 
  0.737
A0A3Q7ISW2
Pectate lyase.
  
 
  0.736
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.