STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7EM40Brix domain-containing protein. (345 aa)    
Predicted Functional Partners:
A0A3Q7ERJ1
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.997
A0A3Q7G9B0
Uncharacterized protein.
   
 0.994
A0A3Q7H9A5
Uncharacterized protein.
   
 0.993
A0A3Q7F809
Uncharacterized protein.
   
 
 0.992
A0A3Q7HD34
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.988
A0A3Q7F288
Uncharacterized protein.
   
   0.987
A0A3Q7HKY4
Uncharacterized protein.
   
 0.987
A0A3Q7E7H4
Protein MAK16 homolog; Belongs to the MAK16 family.
   
  0.983
A0A3Q7JG72
Brix domain-containing protein.
   
 
 0.983
A0A3Q7JNW5
Brix domain-containing protein.
   
 
 0.983
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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