STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7EMP8RING-type E3 ubiquitin transferase. (993 aa)    
Predicted Functional Partners:
A0A3Q7H8N1
Uncharacterized protein.
  
     0.500
A0A3Q7HE77
GRAS domain-containing protein; Belongs to the GRAS family.
  
     0.474
A0A3Q7GL34
Uncharacterized protein.
  
     0.469
A0A3Q7JG36
Uncharacterized protein.
  
 
   0.463
A0A3Q7IN29
C2H2-type domain-containing protein.
  
     0.460
A0A3Q7GVB3
C2H2-type domain-containing protein.
  
     0.455
A0A3Q7G5D6
Uncharacterized protein.
  
     0.432
A0A3Q7G9K5
Uncharacterized protein.
  
     0.431
A0A3Q7JCD5
Uncharacterized protein.
  
     0.423
A0A3Q7E7U8
Uncharacterized protein.
  
 
   0.422
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.