STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7EU37Uncharacterized protein. (313 aa)    
Predicted Functional Partners:
A0A3Q7HZ04
MPN domain-containing protein.
   
 0.972
A0A3Q7FY40
UBX domain-containing protein.
    
 0.928
A0A3Q7HUA6
UBX domain-containing protein.
    
 0.928
A0A3Q7HFD0
OTU domain-containing protein.
   
 
 0.914
A0A3Q7FDJ7
Uncharacterized protein.
   
 
 0.835
A0A3Q7INU2
Uncharacterized protein.
   
 
 0.835
A0A3Q7FAR2
U-box domain-containing protein.
    
 
 0.831
A0A3Q7H302
U-box domain-containing protein.
    
 
 0.831
A0A3Q7JDE8
Ubiquitin-like domain-containing protein.
   
 0.813
UBI3
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involve [...]
   
 0.813
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.