STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7F3J3Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (563 aa)    
Predicted Functional Partners:
A0A3Q7EIX9
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.887
A0A3Q7F9L8
Uncharacterized protein.
      
 0.784
A0A3Q7G9L9
Uncharacterized protein.
   
  
 0.718
A0A3Q7JCI5
Uncharacterized protein.
   
  
 0.718
A0A3Q7I5Y6
Uncharacterized protein.
      
 0.716
A0A3Q7EWB1
Aa_trans domain-containing protein.
      
 0.527
A0A3Q7G8H4
Aa_trans domain-containing protein.
      
 0.527
A0A3Q7GAP7
Aa_trans domain-containing protein.
      
 0.527
A0A3Q7IHR3
Aa_trans domain-containing protein.
      
 0.527
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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