STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7F727Uncharacterized protein. (106 aa)    
Predicted Functional Partners:
A0A3Q7G255
Nuclear pore protein.
   
 0.899
A0A3Q7J2D3
Uncharacterized protein.
   
 0.892
A0A3Q7H7U1
Uncharacterized protein.
   
 0.891
A0A3Q7J866
Nup54 domain-containing protein.
   
 0.885
A0A3Q7IEQ4
WD_REPEATS_REGION domain-containing protein.
   
 0.884
A0A3Q7HUB5
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
   
 0.859
A0A3Q7F9G1
DUF5311 domain-containing protein.
   
 0.839
A0A3Q7HH12
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
   
 0.766
A0A3Q7HR18
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.766
A0A3Q7F6S2
C2H2-type domain-containing protein.
   
 0.764
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.