STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7FAP4HDAC_interact domain-containing protein. (1355 aa)    
Predicted Functional Partners:
A0A3Q7FRH1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.696
SlHDA3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.696
A0A3Q7I824
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.696
A0A3Q7IZG2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.696
A0A3Q7FBL2
MRG domain-containing protein.
    
 0.642
A0A3Q7FCH3
Uncharacterized protein.
   
 
 0.631
A0A3Q7H4G0
Uncharacterized protein.
   
 
 0.631
A0A3Q7FZZ0
Uncharacterized protein.
   
 
 0.566
A0A3Q7GUK7
Uncharacterized protein.
   
 
 0.566
A0A3Q7GHU0
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
    
 0.506
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.