STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7FX44Uncharacterized protein. (217 aa)    
Predicted Functional Partners:
A0A3Q7F8Q2
Nop domain-containing protein.
   
 
 0.795
A0A3Q7FH28
Uncharacterized protein.
   
 
 0.766
A0A3Q7HU21
G-patch domain-containing protein.
   
 
 0.591
A0A3Q7EUH9
Uncharacterized protein.
   
   0.563
A0A3Q7JG72
Brix domain-containing protein.
   
   0.531
A0A3Q7H030
Uncharacterized protein.
   
    0.527
A0A3Q7FXU8
CBF domain-containing protein.
   
  
 0.514
A0A3Q7HHS3
Nop domain-containing protein.
   
 
 0.514
A0A3Q7J2J4
Nop domain-containing protein.
   
 
 0.514
A0A3Q7IK51
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.500
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.