STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7G6E1CMP/dCMP-type deaminase domain-containing protein. (603 aa)    
Predicted Functional Partners:
RibA
GTP_cyclohydro2 domain-containing protein.
 
  
 0.978
A0A3Q7IQP4
GTP_cyclohydro2 domain-containing protein.
 
  
 0.978
A0A3Q7J1F1
GTP_cyclohydro2 domain-containing protein.
 
  
 0.978
A0A3Q7ELT0
CMP/dCMP-type deaminase domain-containing protein.
  
  
0.924
A0A3Q7GN57
Uncharacterized protein.
     
 0.910
A0A3Q7IQ58
Uncharacterized protein.
     
  0.900
A0A3Q7G416
CMP/dCMP-type deaminase domain-containing protein.
   
 0.892
A0A3Q7EUX7
DHFR domain-containing protein.
  
 
 0.847
A0A3Q7HFI3
Uncharacterized protein.
 
   
 0.664
A0A3Q7HLY1
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
   
 0.640
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.