STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7IMG3CobW C-terminal domain-containing protein. (442 aa)    
Predicted Functional Partners:
K4BQD9_SOLLC
Uncharacterized protein.
  
  
 0.649
A0A3Q7ITW7
Uncharacterized protein.
  
 
 0.623
A0A3Q7H2B6
Uncharacterized protein.
  
  
 0.619
rps14
Ribosomal protein S14.
  
  
 0.619
rps14-2
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.619
A0A3Q7G7J3
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
  
 0.602
A0A3Q7HN48
Uncharacterized protein.
  
  
 0.586
A0A3Q7I8Q2
Uncharacterized protein.
  
  
 0.586
A0A3Q7IDU8
Uncharacterized protein.
  
  
 0.586
A0A3Q7F4C1
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). In the C-terminal section; belongs to the pectinesterase family.
    
 
 0.531
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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