STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7IPH3Uncharacterized protein. (70 aa)    
Predicted Functional Partners:
A0A3Q7F4K2
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.998
A0A3Q7GY47
Uncharacterized protein.
    
 0.993
A0A3Q7G5L2
General transcription factor IIH subunit.
    
 0.992
A0A3Q7IAY0
Uncharacterized protein.
    
 0.991
A0A3Q7FV57
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.987
A0A3Q7GYJ9
TFIIE beta domain-containing protein.
    
 0.987
A0A3Q7HJU4
Helicase ATP-binding domain-containing protein.
    
 0.982
A0A3Q7HUB7
Uncharacterized protein.
    
 0.981
A0A3Q7G7G9
MAT1 domain-containing protein.
    
 0.977
A0A3Q7H668
Uncharacterized protein.
    
 0.977
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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