Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A3Q7JC34Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
HY5
Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.
    
 
 0.939
A0A3Q7GWN7
NAC domain-containing protein.
      
 0.676
A0A3Q7I899
B box-type domain-containing protein.
  
   
 0.631
A0A3Q7FMP0
Uncharacterized protein.
      
 0.543
A0A3Q7J5V1
B box-type domain-containing protein.
      
 0.541
A0A3Q7HEA2
B box-type domain-containing protein.
      
 0.536
A0A3Q7IS12
Ubiquinol oxidase; Belongs to the alternative oxidase family.
    
 
 0.526
COP1
Uncharacterized protein.
    
 
 0.526
A0A3Q7F4K8
B box-type domain-containing protein.
      
 0.514
PhyA
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
      
 0.446
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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