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MSI1 protein (Solanum lycopersicum) - STRING interaction network
"MSI1" - WD-40 repeat-containing protein MSI1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSI1WD-40 repeat-containing protein MSI1 (424 aa)    
Predicted Functional Partners:
FIE
Fertilization-independent endosperm protein (372 aa)
     
  0.975
Solyc02g068580.1.1
Uncharacterized protein (468 aa)
     
  0.973
RBR1
Retinoblastoma-related protein 1 (1018 aa)
     
  0.972
Solyc11g067020.1.1
Histone deacetylase (430 aa)
     
  0.968
Solyc09g091440.2.1
Histone deacetylase (498 aa)
     
  0.968
Solyc06g071680.2.1
Histone deacetylase (471 aa)
     
  0.968
Solyc03g112410.1.1
Histone deacetylase (449 aa)
     
  0.968
Solyc12g098160.1.1
Uncharacterized protein (1140 aa)
     
  0.957
Solyc01g067560.2.1
Uncharacterized protein (1209 aa)
     
  0.957
Solyc11g005800.1.1
Uncharacterized protein (448 aa)
     
 
  0.948
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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