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LAT56 protein (Solanum lycopersicum) - STRING interaction network
"LAT56" - Probable pectate lyase P56 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAT56Probable pectate lyase P56 ; Might be needed during pollen development and tube growth (398 aa)    
Predicted Functional Partners:
Solyc00g170510.1.1
Annotation not available (292 aa)
 
   
  0.940
Solyc02g062150.1.1
Pectinesterase (351 aa)
 
   
  0.940
Solyc10g049370.1.1
Pectinesterase (346 aa)
 
   
  0.939
Solyc00g023470.1.1
Annotation not available (348 aa)
 
   
  0.939
Solyc01g066420.2.1
Pectinesterase (552 aa)
 
   
  0.939
Solyc06g084620.1.1
Pectinesterase (564 aa)
 
   
  0.939
Solyc06g009190.2.1
Pectinesterase (564 aa)
 
   
  0.938
Solyc01g099950.1.1
Pectinesterase (520 aa)
 
   
  0.938
Solyc12g099410.1.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (559 aa)
 
   
  0.938
Solyc10g049380.1.1
Pectinesterase (338 aa)
 
   
  0.938
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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