omp-4 protein (Mesorhizobium sp. ORS3324) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

omp-4

Outer membrane lipoprotein omp19. (185 aa)

Predicted Functional Partners:

omp2a

0.770

omp2b

0.769

MPLB_170002

0.769

omp2b-2

0.769

omp2b-4

0.769

omp2b-3

0.767

MPLB_1080003

0.761

MPLB_280089

0.753

MPLB_1540092

0.751

MPLB_1700133

0.751

Your Current Organism:

Mesorhizobium sp. ORS3324

NCBI taxonomy Id: 408180
Other names: M. sp. ORS 3324, Mesorhizobium sp. ORS 3324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLB_1080003	MPLB_1540092	MPLB_1080003	MPLB_1540092	Uncharacterized protein.	Uncharacterized protein.	0.707
MPLB_1080003	MPLB_170002	MPLB_1080003	MPLB_170002	Uncharacterized protein.	DUF2059 domain-containing protein.	0.771
MPLB_1080003	MPLB_1700133	MPLB_1080003	MPLB_1700133	Uncharacterized protein.	Uncharacterized protein.	0.762
MPLB_1080003	MPLB_280089	MPLB_1080003	MPLB_280089	Uncharacterized protein.	Uncharacterized protein.	0.768
MPLB_1080003	omp-4	MPLB_1080003	MPLB_690007	Uncharacterized protein.	Outer membrane lipoprotein omp19.	0.761
MPLB_1080003	omp2a	MPLB_1080003	MPLB_1990009	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.771
MPLB_1080003	omp2b	MPLB_1080003	MPLB_1460036	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.772
MPLB_1080003	omp2b-2	MPLB_1080003	MPLB_1740021	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.771
MPLB_1080003	omp2b-3	MPLB_1080003	MPLB_1740024	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.772
MPLB_1080003	omp2b-4	MPLB_1080003	MPLB_780035	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.772
MPLB_1540092	MPLB_1080003	MPLB_1540092	MPLB_1080003	Uncharacterized protein.	Uncharacterized protein.	0.707
MPLB_1540092	MPLB_170002	MPLB_1540092	MPLB_170002	Uncharacterized protein.	DUF2059 domain-containing protein.	0.726
MPLB_1540092	MPLB_1700133	MPLB_1540092	MPLB_1700133	Uncharacterized protein.	Uncharacterized protein.	0.703
MPLB_1540092	MPLB_280089	MPLB_1540092	MPLB_280089	Uncharacterized protein.	Uncharacterized protein.	0.569
MPLB_1540092	omp-4	MPLB_1540092	MPLB_690007	Uncharacterized protein.	Outer membrane lipoprotein omp19.	0.751
MPLB_1540092	omp2a	MPLB_1540092	MPLB_1990009	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.670
MPLB_1540092	omp2b	MPLB_1540092	MPLB_1460036	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.639
MPLB_1540092	omp2b-2	MPLB_1540092	MPLB_1740021	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.658
MPLB_1540092	omp2b-3	MPLB_1540092	MPLB_1740024	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.626
MPLB_1540092	omp2b-4	MPLB_1540092	MPLB_780035	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.648