ydcS protein (Mesorhizobium sp. ORS3324) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ydcS

annotation not available (384 aa)

Predicted Functional Partners:

ydcV-2

0.889

ydcU

0.889

MPLB_780002

0.861

ydcT-2

0.808

ydcW

0.708

potB-3

0.664

MPLB_100114

0.660

potI-3

0.651

MPLB_1700028

0.628

MPLB_1700027

0.624

Your Current Organism:

Mesorhizobium sp. ORS3324

NCBI taxonomy Id: 408180
Other names: M. sp. ORS 3324, Mesorhizobium sp. ORS 3324

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLB_100114	MPLB_1700028	MPLB_100114	MPLB_1700028	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.531
MPLB_100114	potB-3	MPLB_100114	MPLB_390038	Binding-protein-dependent transport systems inner membrane component.	Polyamine transporter subunit membrane component of ABC superfamily.	0.531
MPLB_100114	ydcS	MPLB_100114	MPLB_780001	Binding-protein-dependent transport systems inner membrane component.	annotation not available	0.660
MPLB_100114	ydcT-2	MPLB_100114	MPLB_770064	Binding-protein-dependent transport systems inner membrane component.	Belongs to the ABC transporter superfamily.	0.541
MPLB_100114	ydcU	MPLB_100114	MPLB_770062	Binding-protein-dependent transport systems inner membrane component.	Putative spermidine/putrescine transporter subunit permease of ABC superfamily transporter.	0.610
MPLB_100114	ydcV-2	MPLB_100114	MPLB_770061	Binding-protein-dependent transport systems inner membrane component.	Putative spermidine/putrescine transporter subunit permease component of ABC superfamily.	0.431
MPLB_1700027	MPLB_1700028	MPLB_1700027	MPLB_1700028	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.988
MPLB_1700027	potB-3	MPLB_1700027	MPLB_390038	Binding-protein-dependent transport systems inner membrane component.	Polyamine transporter subunit membrane component of ABC superfamily.	0.899
MPLB_1700027	potI-3	MPLB_1700027	MPLB_390037	Binding-protein-dependent transport systems inner membrane component.	Putrescine transporter subunit: membrane component of ABC superfamily.	0.420
MPLB_1700027	ydcS	MPLB_1700027	MPLB_780001	Binding-protein-dependent transport systems inner membrane component.	annotation not available	0.624
MPLB_1700027	ydcT-2	MPLB_1700027	MPLB_770064	Binding-protein-dependent transport systems inner membrane component.	Belongs to the ABC transporter superfamily.	0.784
MPLB_1700027	ydcU	MPLB_1700027	MPLB_770062	Binding-protein-dependent transport systems inner membrane component.	Putative spermidine/putrescine transporter subunit permease of ABC superfamily transporter.	0.835
MPLB_1700028	MPLB_100114	MPLB_1700028	MPLB_100114	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.531
MPLB_1700028	MPLB_1700027	MPLB_1700028	MPLB_1700027	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.988
MPLB_1700028	potI-3	MPLB_1700028	MPLB_390037	Binding-protein-dependent transport systems inner membrane component.	Putrescine transporter subunit: membrane component of ABC superfamily.	0.893
MPLB_1700028	ydcS	MPLB_1700028	MPLB_780001	Binding-protein-dependent transport systems inner membrane component.	annotation not available	0.628
MPLB_1700028	ydcT-2	MPLB_1700028	MPLB_770064	Binding-protein-dependent transport systems inner membrane component.	Belongs to the ABC transporter superfamily.	0.831
MPLB_1700028	ydcV-2	MPLB_1700028	MPLB_770061	Binding-protein-dependent transport systems inner membrane component.	Putative spermidine/putrescine transporter subunit permease component of ABC superfamily.	0.853
MPLB_780002	ydcS	MPLB_780002	MPLB_780001	Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	annotation not available	0.861
MPLB_780002	ydcT-2	MPLB_780002	MPLB_770064	Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	Belongs to the ABC transporter superfamily.	0.498