MPLA_1150002 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1150002

Polar amino acid ABC transporter inner membrane subunit. (214 aa)

Predicted Functional Partners:

MPLA_1150001

0.989

MPLA_1140007

0.976

hisQ-2

0.970

glnQ

0.969

glnH

0.967

hisJ

0.941

fliY

0.935

gltL

0.929

MPLA_670032

0.928

aapQ-2

0.928

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1140007	MPLA_1150001	MPLA_1140007	MPLA_1150001	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid ABC transporter inner membrane subunit.	0.946
MPLA_1140007	MPLA_1150002	MPLA_1140007	MPLA_1150002	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid ABC transporter inner membrane subunit.	0.976
MPLA_1140007	MPLA_670032	MPLA_1140007	MPLA_670032	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD.	0.688
MPLA_1140007	aapQ-2	MPLA_1140007	MPLA_740010	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino-acid transporter subunit membrane component of ABC superfamily.	0.681
MPLA_1140007	glnQ	MPLA_1140007	MPLA_1800187	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamine transporter subunit ATP-binding component of ABC superfamily.	0.852
MPLA_1140007	gltL	MPLA_1140007	MPLA_680063	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamate and aspartate transporter subunit ATP-binding component of ABC superfamily.	0.708
MPLA_1140007	hisQ-2	MPLA_1140007	MPLA_340116	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.720
MPLA_1150001	MPLA_1140007	MPLA_1150001	MPLA_1140007	Polar amino acid ABC transporter inner membrane subunit.	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.946
MPLA_1150001	MPLA_1150002	MPLA_1150001	MPLA_1150002	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.989
MPLA_1150001	MPLA_670032	MPLA_1150001	MPLA_670032	Polar amino acid ABC transporter inner membrane subunit.	Glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD.	0.930
MPLA_1150001	aapQ-2	MPLA_1150001	MPLA_740010	Polar amino acid ABC transporter inner membrane subunit.	Amino-acid transporter subunit membrane component of ABC superfamily.	0.926
MPLA_1150001	fliY	MPLA_1150001	MPLA_990003	Polar amino acid ABC transporter inner membrane subunit.	Cystine transporter subunit periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 3 family.	0.880
MPLA_1150001	glnH	MPLA_1150001	MPLA_1800189	Polar amino acid ABC transporter inner membrane subunit.	Glutamine transporter subunit periplasmic binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 3 family.	0.939
MPLA_1150001	glnQ	MPLA_1150001	MPLA_1800187	Polar amino acid ABC transporter inner membrane subunit.	Glutamine transporter subunit ATP-binding component of ABC superfamily.	0.925
MPLA_1150001	gltL	MPLA_1150001	MPLA_680063	Polar amino acid ABC transporter inner membrane subunit.	Glutamate and aspartate transporter subunit ATP-binding component of ABC superfamily.	0.932
MPLA_1150001	hisJ	MPLA_1150001	MPLA_1830158	Polar amino acid ABC transporter inner membrane subunit.	Belongs to the bacterial solute-binding protein 3 family.	0.906
MPLA_1150001	hisQ-2	MPLA_1150001	MPLA_340116	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.925
MPLA_1150002	MPLA_1140007	MPLA_1150002	MPLA_1140007	Polar amino acid ABC transporter inner membrane subunit.	Family 3 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.976
MPLA_1150002	MPLA_1150001	MPLA_1150002	MPLA_1150001	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.989
MPLA_1150002	MPLA_670032	MPLA_1150002	MPLA_670032	Polar amino acid ABC transporter inner membrane subunit.	Glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD.	0.928