STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_120031Helix-turn-helix protein RpiR. (315 aa)    
Predicted Functional Partners:
glk
Glucokinase; Belongs to the bacterial glucokinase family.
 
 
 0.676
eda
annotation not available
 
  
 0.558
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.548
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.475
MPLA_140019
SIS domain-containing protein.
 
     0.466
MPLA_120028
NMT1 domain-containing protein.
 
     0.438
MPLA_120029
Binding-protein-dependent transport systems inner membrane component.
       0.431
MPLA_120030
ABC transporter domain-containing protein.
       0.431
dgoA
2-oxo-3-deoxygalactonate 6-phosphate aldolase.
 
  
 0.431
murQ
N-acetylmuramic acid 6-phosphate etherase.
 
  
 0.410
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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