MPLA_1220027 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1220027

Uncharacterized protein. (80 aa)

Predicted Functional Partners:

MPLA_1220028

0.955

MPLA_630035

0.792

MPLA_140312

0.757

hisD

0.706

hisD-2

0.706

hisD-3

0.706

MPLA_1220026

0.615

MPLA_30108

0.543

suhB

0.543

MPLA_720044

0.543

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1220026	MPLA_1220027	MPLA_1220026	MPLA_1220027	Uncharacterized protein.	Uncharacterized protein.	0.615
MPLA_1220026	MPLA_1220028	MPLA_1220026	MPLA_1220028	Uncharacterized protein.	Putative VapC ribonuclease R02377.	0.615
MPLA_1220027	MPLA_1220026	MPLA_1220027	MPLA_1220026	Uncharacterized protein.	Uncharacterized protein.	0.615
MPLA_1220027	MPLA_1220028	MPLA_1220027	MPLA_1220028	Uncharacterized protein.	Putative VapC ribonuclease R02377.	0.955
MPLA_1220027	MPLA_140312	MPLA_1220027	MPLA_140312	Uncharacterized protein.	Mono-phosphatase.	0.757
MPLA_1220027	MPLA_30108	MPLA_1220027	MPLA_30108	Uncharacterized protein.	Inositol monophosphatase.	0.543
MPLA_1220027	MPLA_630035	MPLA_1220027	MPLA_630035	Uncharacterized protein.	PilT protein domain protein.	0.792
MPLA_1220027	MPLA_720044	MPLA_1220027	MPLA_720044	Uncharacterized protein.	Inositol monophosphatase family protein.	0.543
MPLA_1220027	hisD	MPLA_1220027	MPLA_1620061	Uncharacterized protein.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.706
MPLA_1220027	hisD-2	MPLA_1220027	MPLA_720021	Uncharacterized protein.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.706
MPLA_1220027	hisD-3	MPLA_1220027	MPLA_770004	Uncharacterized protein.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.706
MPLA_1220027	suhB	MPLA_1220027	MPLA_580047	Uncharacterized protein.	Inositol-1-monophosphatase; Belongs to the inositol monophosphatase superfamily.	0.543
MPLA_1220028	MPLA_1220026	MPLA_1220028	MPLA_1220026	Putative VapC ribonuclease R02377.	Uncharacterized protein.	0.615
MPLA_1220028	MPLA_1220027	MPLA_1220028	MPLA_1220027	Putative VapC ribonuclease R02377.	Uncharacterized protein.	0.955
MPLA_140312	MPLA_1220027	MPLA_140312	MPLA_1220027	Mono-phosphatase.	Uncharacterized protein.	0.757
MPLA_140312	hisD	MPLA_140312	MPLA_1620061	Mono-phosphatase.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.942
MPLA_140312	hisD-2	MPLA_140312	MPLA_720021	Mono-phosphatase.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.834
MPLA_140312	hisD-3	MPLA_140312	MPLA_770004	Mono-phosphatase.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.755
MPLA_30108	MPLA_1220027	MPLA_30108	MPLA_1220027	Inositol monophosphatase.	Uncharacterized protein.	0.543
MPLA_30108	MPLA_720044	MPLA_30108	MPLA_720044	Inositol monophosphatase.	Inositol monophosphatase family protein.	0.668