MPLA_1230032 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1230032

Uncharacterized protein. (113 aa)

Predicted Functional Partners:

MPLA_1100019

0.644

yeaX

0.644

MPLA_670021

0.644

MPLA_1650161

0.638

MPLA_140271

0.566

MPLA_1100041

0.543

MPLA_1390066

0.531

MPLA_1520007

0.526

MPLA_1830272

0.486

MPLA_1320016

0.484

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1100019	MPLA_1230032	MPLA_1100019	MPLA_1230032	Ferredoxin.	Uncharacterized protein.	0.644
MPLA_1100019	MPLA_670021	MPLA_1100019	MPLA_670021	Ferredoxin.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.846
MPLA_1100019	yeaX	MPLA_1100019	MPLA_660032	Ferredoxin.	Putative dioxygenase subunit.	0.627
MPLA_1100041	MPLA_1230032	MPLA_1100041	MPLA_1230032	Uncharacterized protein.	Uncharacterized protein.	0.543
MPLA_1100041	MPLA_1320016	MPLA_1100041	MPLA_1320016	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1100041	MPLA_140271	MPLA_1100041	MPLA_140271	Uncharacterized protein.	GtrA family protein.	0.752
MPLA_1230032	MPLA_1100019	MPLA_1230032	MPLA_1100019	Uncharacterized protein.	Ferredoxin.	0.644
MPLA_1230032	MPLA_1100041	MPLA_1230032	MPLA_1100041	Uncharacterized protein.	Uncharacterized protein.	0.543
MPLA_1230032	MPLA_1320016	MPLA_1230032	MPLA_1320016	Uncharacterized protein.	Uncharacterized protein.	0.484
MPLA_1230032	MPLA_1390066	MPLA_1230032	MPLA_1390066	Uncharacterized protein.	Family 1 extracellular solute-binding protein.	0.531
MPLA_1230032	MPLA_140271	MPLA_1230032	MPLA_140271	Uncharacterized protein.	GtrA family protein.	0.566
MPLA_1230032	MPLA_1520007	MPLA_1230032	MPLA_1520007	Uncharacterized protein.	Stress responsive alpha-beta barrel domain protein.	0.526
MPLA_1230032	MPLA_1650161	MPLA_1230032	MPLA_1650161	Uncharacterized protein.	Uncharacterized protein.	0.638
MPLA_1230032	MPLA_1830272	MPLA_1230032	MPLA_1830272	Uncharacterized protein.	Chloramphenicol phosphotransferase family protein.	0.486
MPLA_1230032	MPLA_670021	MPLA_1230032	MPLA_670021	Uncharacterized protein.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.644
MPLA_1230032	yeaX	MPLA_1230032	MPLA_660032	Uncharacterized protein.	Putative dioxygenase subunit.	0.644
MPLA_1320016	MPLA_1100041	MPLA_1320016	MPLA_1100041	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1320016	MPLA_1230032	MPLA_1320016	MPLA_1230032	Uncharacterized protein.	Uncharacterized protein.	0.484
MPLA_1320016	MPLA_140271	MPLA_1320016	MPLA_140271	Uncharacterized protein.	GtrA family protein.	0.744
MPLA_1390066	MPLA_1230032	MPLA_1390066	MPLA_1230032	Family 1 extracellular solute-binding protein.	Uncharacterized protein.	0.531