MPLA_1280100 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1280100

Amidinotransferase. (310 aa)

Predicted Functional Partners:

MPLA_1280099

0.879

gmk

0.723

MPLA_1360037

0.708

MPLA_770081

0.694

MPLA_1380016

0.685

dnaK

0.685

gltB

0.682

MPLA_230034

0.681

dnaQ

0.679

MPLA_160010

0.661

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1280099	MPLA_1280100	MPLA_1280099	MPLA_1280100	Uncharacterized protein.	Amidinotransferase.	0.879
MPLA_1280099	gltB	MPLA_1280099	MPLA_140317	Uncharacterized protein.	Glutamate synthase, large subunit.	0.686
MPLA_1280100	MPLA_1280099	MPLA_1280100	MPLA_1280099	Amidinotransferase.	Uncharacterized protein.	0.879
MPLA_1280100	MPLA_1360037	MPLA_1280100	MPLA_1360037	Amidinotransferase.	Putative phosphoprotein phosphatase.	0.708
MPLA_1280100	MPLA_1380016	MPLA_1280100	MPLA_1380016	Amidinotransferase.	DnaK-type molecular chaperone DnaK.	0.685
MPLA_1280100	MPLA_160010	MPLA_1280100	MPLA_160010	Amidinotransferase.	Pyridoxal-dependent decarboxylase.	0.661
MPLA_1280100	MPLA_230034	MPLA_1280100	MPLA_230034	Amidinotransferase.	ANK_REP_REGION domain-containing protein.	0.681
MPLA_1280100	MPLA_770081	MPLA_1280100	MPLA_770081	Amidinotransferase.	Uncharacterized protein.	0.694
MPLA_1280100	dnaK	MPLA_1280100	MPLA_860003	Amidinotransferase.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.685
MPLA_1280100	dnaQ	MPLA_1280100	MPLA_390017	Amidinotransferase.	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.679
MPLA_1280100	gltB	MPLA_1280100	MPLA_140317	Amidinotransferase.	Glutamate synthase, large subunit.	0.682
MPLA_1280100	gmk	MPLA_1280100	MPLA_1260015	Amidinotransferase.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.723
MPLA_1360037	MPLA_1280100	MPLA_1360037	MPLA_1280100	Putative phosphoprotein phosphatase.	Amidinotransferase.	0.708
MPLA_1360037	MPLA_1380016	MPLA_1360037	MPLA_1380016	Putative phosphoprotein phosphatase.	DnaK-type molecular chaperone DnaK.	0.914
MPLA_1360037	MPLA_160010	MPLA_1360037	MPLA_160010	Putative phosphoprotein phosphatase.	Pyridoxal-dependent decarboxylase.	0.775
MPLA_1360037	MPLA_230034	MPLA_1360037	MPLA_230034	Putative phosphoprotein phosphatase.	ANK_REP_REGION domain-containing protein.	0.957
MPLA_1360037	MPLA_770081	MPLA_1360037	MPLA_770081	Putative phosphoprotein phosphatase.	Uncharacterized protein.	0.860
MPLA_1360037	dnaK	MPLA_1360037	MPLA_860003	Putative phosphoprotein phosphatase.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.914
MPLA_1360037	dnaQ	MPLA_1360037	MPLA_390017	Putative phosphoprotein phosphatase.	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.703
MPLA_1380016	MPLA_1280100	MPLA_1380016	MPLA_1280100	DnaK-type molecular chaperone DnaK.	Amidinotransferase.	0.685