MPLA_1290006 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

MPLA_1290006

Uncharacterized protein. (474 aa)

Predicted Functional Partners:

MPLA_1850043

0.694

trxA

0.622

MPLA_430025

0.622

trxC

0.622

MPLA_1190074

0.615

MPLA_1350077

0.614

MPLA_1360043

0.601

MPLA_770051

0.589

MPLA_770052

0.589

MPLA_2100001

0.569

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1190074	MPLA_1290006	MPLA_1190074	MPLA_1290006	Transposase.	Uncharacterized protein.	0.615
MPLA_1190074	MPLA_1360043	MPLA_1190074	MPLA_1360043	Transposase.	Uncharacterized protein.	0.892
MPLA_1290006	MPLA_1190074	MPLA_1290006	MPLA_1190074	Uncharacterized protein.	Transposase.	0.615
MPLA_1290006	MPLA_1350077	MPLA_1290006	MPLA_1350077	Uncharacterized protein.	Uncharacterized protein.	0.614
MPLA_1290006	MPLA_1360043	MPLA_1290006	MPLA_1360043	Uncharacterized protein.	Uncharacterized protein.	0.601
MPLA_1290006	MPLA_1850043	MPLA_1290006	MPLA_1850043	Uncharacterized protein.	Uncharacterized protein.	0.694
MPLA_1290006	MPLA_2100001	MPLA_1290006	MPLA_2100001	Uncharacterized protein.	Transposase.	0.569
MPLA_1290006	MPLA_430025	MPLA_1290006	MPLA_430025	Uncharacterized protein.	Thioredoxin.	0.622
MPLA_1290006	MPLA_770051	MPLA_1290006	MPLA_770051	Uncharacterized protein.	Uncharacterized protein.	0.589
MPLA_1290006	MPLA_770052	MPLA_1290006	MPLA_770052	Uncharacterized protein.	DUF2063 domain-containing protein.	0.589
MPLA_1290006	trxA	MPLA_1290006	MPLA_1170062	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.622
MPLA_1290006	trxC	MPLA_1290006	MPLA_830042	Uncharacterized protein.	Thioredoxin 2.	0.622
MPLA_1350077	MPLA_1290006	MPLA_1350077	MPLA_1290006	Uncharacterized protein.	Uncharacterized protein.	0.614
MPLA_1360043	MPLA_1190074	MPLA_1360043	MPLA_1190074	Uncharacterized protein.	Transposase.	0.892
MPLA_1360043	MPLA_1290006	MPLA_1360043	MPLA_1290006	Uncharacterized protein.	Uncharacterized protein.	0.601
MPLA_1360043	MPLA_2100001	MPLA_1360043	MPLA_2100001	Uncharacterized protein.	Transposase.	0.890
MPLA_1850043	MPLA_1290006	MPLA_1850043	MPLA_1290006	Uncharacterized protein.	Uncharacterized protein.	0.694
MPLA_1850043	MPLA_430025	MPLA_1850043	MPLA_430025	Uncharacterized protein.	Thioredoxin.	0.617
MPLA_1850043	trxA	MPLA_1850043	MPLA_1170062	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.617
MPLA_1850043	trxC	MPLA_1850043	MPLA_830042	Uncharacterized protein.	Thioredoxin 2.	0.617