usg protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

usg

Protein usg. (97 aa)

Predicted Functional Partners:

MPLA_1320011

0.794

trpD

0.761

MPLA_140303

0.743

dapA

0.740

hom

0.740

lysC

0.740

trpC

0.738

MPLA_320063

0.738

MPLA_580008

0.738

MPLA_680059

0.738

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1320011	usg	MPLA_1320011	MPLA_1320012	Uncharacterized protein.	Protein usg.	0.794
MPLA_140303	usg	MPLA_140303	MPLA_1320012	Uncharacterized protein.	Protein usg.	0.743
MPLA_320063	MPLA_580008	MPLA_320063	MPLA_580008	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	Dihydrodipicolinate synthase; Belongs to the DapA family.	0.522
MPLA_320063	MPLA_680059	MPLA_320063	MPLA_680059	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	Dihydrodipicolinate synthase; Belongs to the DapA family.	0.906
MPLA_320063	dapA	MPLA_320063	MPLA_1220004	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.745
MPLA_320063	hom	MPLA_320063	MPLA_290034	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	Homoserine dehydrogenase.	0.743
MPLA_320063	lysC	MPLA_320063	MPLA_950011	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	Aspartokinase; Belongs to the aspartokinase family.	0.685
MPLA_320063	usg	MPLA_320063	MPLA_1320012	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	Protein usg.	0.738
MPLA_580008	MPLA_320063	MPLA_580008	MPLA_320063	Dihydrodipicolinate synthase; Belongs to the DapA family.	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	0.522
MPLA_580008	dapA	MPLA_580008	MPLA_1220004	Dihydrodipicolinate synthase; Belongs to the DapA family.	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.711
MPLA_580008	hom	MPLA_580008	MPLA_290034	Dihydrodipicolinate synthase; Belongs to the DapA family.	Homoserine dehydrogenase.	0.690
MPLA_580008	lysC	MPLA_580008	MPLA_950011	Dihydrodipicolinate synthase; Belongs to the DapA family.	Aspartokinase; Belongs to the aspartokinase family.	0.549
MPLA_580008	usg	MPLA_580008	MPLA_1320012	Dihydrodipicolinate synthase; Belongs to the DapA family.	Protein usg.	0.738
MPLA_680059	MPLA_320063	MPLA_680059	MPLA_320063	Dihydrodipicolinate synthase; Belongs to the DapA family.	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	0.906
MPLA_680059	dapA	MPLA_680059	MPLA_1220004	Dihydrodipicolinate synthase; Belongs to the DapA family.	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.750
MPLA_680059	hom	MPLA_680059	MPLA_290034	Dihydrodipicolinate synthase; Belongs to the DapA family.	Homoserine dehydrogenase.	0.749
MPLA_680059	lysC	MPLA_680059	MPLA_950011	Dihydrodipicolinate synthase; Belongs to the DapA family.	Aspartokinase; Belongs to the aspartokinase family.	0.686
MPLA_680059	usg	MPLA_680059	MPLA_1320012	Dihydrodipicolinate synthase; Belongs to the DapA family.	Protein usg.	0.738
dapA	MPLA_320063	MPLA_1220004	MPLA_320063	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Dihydrodipicolinate synthase family protein; Belongs to the DapA family.	0.745
dapA	MPLA_580008	MPLA_1220004	MPLA_580008	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Dihydrodipicolinate synthase; Belongs to the DapA family.	0.711