MPLA_1390081 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1390081

ADH_zinc_N domain-containing protein. (192 aa)

Predicted Functional Partners:

MPLA_140280

0.877

MPLA_1650051

0.877

tftE

0.877

adhC

0.832

MPLA_1390083

0.694

MPLA_1390084

0.690

MPLA_1390082

0.676

MPLA_1680006

0.629

ehhadh

0.629

MPLA_730052

0.612

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1390081	MPLA_1390082	MPLA_1390081	MPLA_1390082	ADH_zinc_N domain-containing protein.	Putative ABC transporter (Permease protein).	0.676
MPLA_1390081	MPLA_1390083	MPLA_1390081	MPLA_1390083	ADH_zinc_N domain-containing protein.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.694
MPLA_1390081	MPLA_1390084	MPLA_1390081	MPLA_1390084	ADH_zinc_N domain-containing protein.	Putative HlyD-family secretion protein, yhiI-like protein.	0.690
MPLA_1390081	MPLA_140280	MPLA_1390081	MPLA_140280	ADH_zinc_N domain-containing protein.	Iron-containing alcohol dehydrogenase.	0.877
MPLA_1390081	MPLA_1650051	MPLA_1390081	MPLA_1650051	ADH_zinc_N domain-containing protein.	Alcohol dehydrogenase.	0.877
MPLA_1390081	MPLA_1680006	MPLA_1390081	MPLA_1680006	ADH_zinc_N domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.	0.629
MPLA_1390081	MPLA_730052	MPLA_1390081	MPLA_730052	ADH_zinc_N domain-containing protein.	Alcohol dehydrogenase zinc-binding domain protein.	0.612
MPLA_1390081	adhC	MPLA_1390081	MPLA_280009	ADH_zinc_N domain-containing protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.832
MPLA_1390081	ehhadh	MPLA_1390081	MPLA_540001	ADH_zinc_N domain-containing protein.	Peroxisomal bifunctional enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.	0.629
MPLA_1390081	tftE	MPLA_1390081	MPLA_90047	ADH_zinc_N domain-containing protein.	Maleylacetate reductase.	0.877
MPLA_1390082	MPLA_1390081	MPLA_1390082	MPLA_1390081	Putative ABC transporter (Permease protein).	ADH_zinc_N domain-containing protein.	0.676
MPLA_1390082	MPLA_1390083	MPLA_1390082	MPLA_1390083	Putative ABC transporter (Permease protein).	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.928
MPLA_1390082	MPLA_1390084	MPLA_1390082	MPLA_1390084	Putative ABC transporter (Permease protein).	Putative HlyD-family secretion protein, yhiI-like protein.	0.965
MPLA_1390083	MPLA_1390081	MPLA_1390083	MPLA_1390081	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ADH_zinc_N domain-containing protein.	0.694
MPLA_1390083	MPLA_1390082	MPLA_1390083	MPLA_1390082	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Putative ABC transporter (Permease protein).	0.928
MPLA_1390083	MPLA_1390084	MPLA_1390083	MPLA_1390084	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Putative HlyD-family secretion protein, yhiI-like protein.	0.958
MPLA_1390084	MPLA_1390081	MPLA_1390084	MPLA_1390081	Putative HlyD-family secretion protein, yhiI-like protein.	ADH_zinc_N domain-containing protein.	0.690
MPLA_1390084	MPLA_1390082	MPLA_1390084	MPLA_1390082	Putative HlyD-family secretion protein, yhiI-like protein.	Putative ABC transporter (Permease protein).	0.965
MPLA_1390084	MPLA_1390083	MPLA_1390084	MPLA_1390083	Putative HlyD-family secretion protein, yhiI-like protein.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.958
MPLA_140280	MPLA_1390081	MPLA_140280	MPLA_1390081	Iron-containing alcohol dehydrogenase.	ADH_zinc_N domain-containing protein.	0.877