msuE protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

msuE

FMN reductase (NADPH). (187 aa)

Predicted Functional Partners:

MPLA_390003

0.961

ssuD

0.960

MPLA_530010

0.959

ssuA

0.919

MPLA_800003

0.915

ntaA-2

0.901

MPLA_350006

0.899

tauB

0.884

ntaA

0.884

cysH

0.873

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_350006	MPLA_390003	MPLA_350006	MPLA_390003	Nitrilotriacetate monooxygenase component A.	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	0.740
MPLA_350006	MPLA_530010	MPLA_350006	MPLA_530010	Nitrilotriacetate monooxygenase component A.	Bac_luciferase domain-containing protein.	0.768
MPLA_350006	cysH	MPLA_350006	MPLA_1650120	Nitrilotriacetate monooxygenase component A.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.509
MPLA_350006	msuE	MPLA_350006	MPLA_140029	Nitrilotriacetate monooxygenase component A.	FMN reductase (NADPH).	0.899
MPLA_350006	ntaA-2	MPLA_350006	MPLA_350007	Nitrilotriacetate monooxygenase component A.	Nitrilotriacetate monooxygenase component A.	0.830
MPLA_350006	ssuA	MPLA_350006	MPLA_390001	Nitrilotriacetate monooxygenase component A.	Alkanesulfonate transporter subunit periplasmic-binding component of ABC superfamily.	0.613
MPLA_350006	ssuD	MPLA_350006	MPLA_390002	Nitrilotriacetate monooxygenase component A.	Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.876
MPLA_390003	MPLA_350006	MPLA_390003	MPLA_350006	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Nitrilotriacetate monooxygenase component A.	0.740
MPLA_390003	MPLA_530010	MPLA_390003	MPLA_530010	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Bac_luciferase domain-containing protein.	0.805
MPLA_390003	MPLA_800003	MPLA_390003	MPLA_800003	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Bac_luciferase domain-containing protein.	0.761
MPLA_390003	msuE	MPLA_390003	MPLA_140029	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	FMN reductase (NADPH).	0.961
MPLA_390003	ntaA	MPLA_390003	MPLA_1390183	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Nitrilotriacetate monooxygenase component A.	0.752
MPLA_390003	ntaA-2	MPLA_390003	MPLA_350007	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Nitrilotriacetate monooxygenase component A.	0.760
MPLA_390003	ssuA	MPLA_390003	MPLA_390001	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Alkanesulfonate transporter subunit periplasmic-binding component of ABC superfamily.	0.990
MPLA_390003	ssuD	MPLA_390003	MPLA_390002	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.984
MPLA_390003	tauB	MPLA_390003	MPLA_1280053	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	Taurine transporter subunit ATP-binding component of ABC superfamily.	0.928
MPLA_530010	MPLA_350006	MPLA_530010	MPLA_350006	Bac_luciferase domain-containing protein.	Nitrilotriacetate monooxygenase component A.	0.768
MPLA_530010	MPLA_390003	MPLA_530010	MPLA_390003	Bac_luciferase domain-containing protein.	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	0.805
MPLA_530010	MPLA_800003	MPLA_530010	MPLA_800003	Bac_luciferase domain-containing protein.	Bac_luciferase domain-containing protein.	0.770
MPLA_530010	cysH	MPLA_530010	MPLA_1650120	Bac_luciferase domain-containing protein.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.822