Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MPLA_140056Transcriptional regulator, AraC family. (356 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit.
    
 0.667
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.572
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.557
MPLA_140057
ABC sugar transporter, periplasmic ligand binding protein.
       0.524
maeB
Putative fused malic enzyme oxidoreductase phosphotransacetylase.
     
 0.511
maeB-2
Putative fused malic enzyme oxidoreductase phosphotransacetylase.
     
 0.511
rbsA-4
Ribose import ATP-binding protein RbsA 1.
    
  0.477
MPLA_140060
Cupin 2 conserved barrel domain protein.
  
   0.452
MPLA_140059
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.402
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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