MPLA_140091 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_140091

ABC transporter related protein. (241 aa)

Predicted Functional Partners:

MPLA_140092

0.984

MPLA_140089

0.962

MPLA_140090

0.962

MPLA_1390083

0.851

MPLA_140100

0.829

MPLA_1070003

0.806

xoxF

0.741

nodJ

0.729

atpC

0.723

MPLA_1070021

0.719

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1070003	MPLA_1070021	MPLA_1070003	MPLA_1070021	ABC-2 type transporter.	Transport permease protein.	0.875
MPLA_1070003	MPLA_1390083	MPLA_1070003	MPLA_1390083	ABC-2 type transporter.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.661
MPLA_1070003	MPLA_140091	MPLA_1070003	MPLA_140091	ABC-2 type transporter.	ABC transporter related protein.	0.806
MPLA_1070003	MPLA_140092	MPLA_1070003	MPLA_140092	ABC-2 type transporter.	Transport permease protein.	0.811
MPLA_1070003	MPLA_140100	MPLA_1070003	MPLA_140100	ABC-2 type transporter.	Extracellular solute-binding protein family 3.	0.507
MPLA_1070003	nodJ	MPLA_1070003	MPLA_670147	ABC-2 type transporter.	Nodulation protein J; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter.	0.733
MPLA_1070021	MPLA_1070003	MPLA_1070021	MPLA_1070003	Transport permease protein.	ABC-2 type transporter.	0.875
MPLA_1070021	MPLA_1390083	MPLA_1070021	MPLA_1390083	Transport permease protein.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.624
MPLA_1070021	MPLA_140090	MPLA_1070021	MPLA_140090	Transport permease protein.	40-residue YVTN family beta-propeller repeat protein.	0.400
MPLA_1070021	MPLA_140091	MPLA_1070021	MPLA_140091	Transport permease protein.	ABC transporter related protein.	0.719
MPLA_1070021	MPLA_140092	MPLA_1070021	MPLA_140092	Transport permease protein.	Transport permease protein.	0.894
MPLA_1070021	MPLA_140100	MPLA_1070021	MPLA_140100	Transport permease protein.	Extracellular solute-binding protein family 3.	0.507
MPLA_1070021	nodJ	MPLA_1070021	MPLA_670147	Transport permease protein.	Nodulation protein J; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter.	0.923
MPLA_1390083	MPLA_1070003	MPLA_1390083	MPLA_1070003	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ABC-2 type transporter.	0.661
MPLA_1390083	MPLA_1070021	MPLA_1390083	MPLA_1070021	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Transport permease protein.	0.624
MPLA_1390083	MPLA_140089	MPLA_1390083	MPLA_140089	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Uncharacterized protein.	0.468
MPLA_1390083	MPLA_140091	MPLA_1390083	MPLA_140091	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ABC transporter related protein.	0.851
MPLA_1390083	MPLA_140092	MPLA_1390083	MPLA_140092	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Transport permease protein.	0.624
MPLA_1390083	MPLA_140100	MPLA_1390083	MPLA_140100	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Extracellular solute-binding protein family 3.	0.733
MPLA_1390083	nodJ	MPLA_1390083	MPLA_670147	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Nodulation protein J; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter.	0.624