Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MPLA_140137Oligopeptide ABC transporter, permease protein. (393 aa)    
Predicted Functional Partners:
MPLA_140135
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein.
 
  0.994
MPLA_140136
Oligopeptide ABC transporter, permease protein.
 
  0.985
yliA
Putative peptide transport fused subunits of ABC superfamily: ATP-binding components; Belongs to the ABC transporter superfamily.
 
  0.974
MPLA_1800007
Binding-protein-dependent transport systems inner membrane component.
  
  0.921
oppD
Oligopeptide transporter subunit ATP-binding component of ABC superfamily.
 
  0.877
yliC-4
Putative peptide transporter permease subunit: membrane component of ABC superfamily.
  
  0.875
oppB
Oligopeptide transporter subunit membrane component of ABC superfamily.
  
  0.871
MPLA_1610003
Binding-protein-dependent transport systems inner membrane component.
  
  0.866
MPLA_800015
ABC transporter ATP-binding component.
 
  0.861
yliC
Putative peptide transporter permease subunit: membrane component of ABC superfamily.
  
  0.860
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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