MPLA_140144 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_140144

Thioredoxin domain-containing protein. (226 aa)

Predicted Functional Partners:

MPLA_140143

0.743

tmk

0.713

trpC

0.583

flgC

0.570

xdhA

0.555

trpB

0.530

tktA

0.526

PRX

0.494

trpA

0.492

acoA

0.444

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_140143	MPLA_140144	MPLA_140143	MPLA_140144	Guanylate cyclase domain-containing protein.	Thioredoxin domain-containing protein.	0.743
MPLA_140143	tmk	MPLA_140143	MPLA_1830105	Guanylate cyclase domain-containing protein.	Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.640
MPLA_140144	MPLA_140143	MPLA_140144	MPLA_140143	Thioredoxin domain-containing protein.	Guanylate cyclase domain-containing protein.	0.743
MPLA_140144	PRX	MPLA_140144	MPLA_180077	Thioredoxin domain-containing protein.	Mitochondrial peroxiredoxin PRX1.	0.494
MPLA_140144	acoA	MPLA_140144	MPLA_1550066	Thioredoxin domain-containing protein.	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.	0.444
MPLA_140144	flgC	MPLA_140144	MPLA_160140	Thioredoxin domain-containing protein.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.570
MPLA_140144	tktA	MPLA_140144	MPLA_180074	Thioredoxin domain-containing protein.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.526
MPLA_140144	tmk	MPLA_140144	MPLA_1830105	Thioredoxin domain-containing protein.	Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.713
MPLA_140144	trpA	MPLA_140144	MPLA_1170068	Thioredoxin domain-containing protein.	Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.492
MPLA_140144	trpB	MPLA_140144	MPLA_1170069	Thioredoxin domain-containing protein.	Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.530
MPLA_140144	trpC	MPLA_140144	MPLA_1830237	Thioredoxin domain-containing protein.	Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.	0.583
MPLA_140144	xdhA	MPLA_140144	MPLA_1120010	Thioredoxin domain-containing protein.	Xanthine dehydrogenase, molybdenum binding subunit.	0.555
PRX	MPLA_140144	MPLA_180077	MPLA_140144	Mitochondrial peroxiredoxin PRX1.	Thioredoxin domain-containing protein.	0.494
PRX	tktA	MPLA_180077	MPLA_180074	Mitochondrial peroxiredoxin PRX1.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.586
acoA	MPLA_140144	MPLA_1550066	MPLA_140144	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.	Thioredoxin domain-containing protein.	0.444
acoA	tktA	MPLA_1550066	MPLA_180074	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.689
flgC	MPLA_140144	MPLA_160140	MPLA_140144	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Thioredoxin domain-containing protein.	0.570
tktA	MPLA_140144	MPLA_180074	MPLA_140144	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Thioredoxin domain-containing protein.	0.526
tktA	PRX	MPLA_180074	MPLA_180077	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Mitochondrial peroxiredoxin PRX1.	0.586
tktA	acoA	MPLA_180074	MPLA_1550066	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.	0.689