STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (355 aa)    
Predicted Functional Partners:
MPLA_140201
Candidate ABC type Fe3+ transport system, permease component with duplicated domains.
 
 0.947
MPLA_200012
Binding-protein-dependent transport systems inner membrane component.
 
  0.860
MPLA_750081
Putative transmembrane component of ABC transporter.
 
  0.858
MPLA_140200
Candidate ABC type Fe3+ transport system, periplasmic component.
 
 
 0.857
potC
Polyamine transporter subunit membrane component of ABC superfamily.
 
  0.853
MPLA_660002
ABC transporter, permease protein.
 
  0.838
MPLA_750082
ABC-type spermidine/putrescine transport system, permease component I.
  
  0.825
MPLA_650019
Binding-protein-dependent transport systems inner membrane component.
 
  0.823
MPLA_1830223
Putative ABC transporter, permease protein.
 
  0.821
potI
Putrescine transporter subunit: membrane component of ABC superfamily.
 
  0.809
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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