STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dgdA2,2-dialkylglycine decarboxylase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)    
Predicted Functional Partners:
MPLA_870003
AMP-dependent synthetase and ligase.
  
 
 0.868
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.826
tsaD
Putative 4-(Hydroxymethyl)benzenesulfonate dehydrogenase TsaD2.
   
  0.813
vdh
Vanillin dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  0.813
gltB
Glutamate synthase, large subunit.
     
 0.784
lysC
Aspartokinase; Belongs to the aspartokinase family.
    
 0.780
MPLA_1110003
Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  0.767
puuC
Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent; Belongs to the aldehyde dehydrogenase family.
   
  0.767
MPLA_580001
Methylmalonate-semialdehyde dehydrogenase.
   
  0.767
gabD-4
Succinate-semialdehyde dehydrogenase I, NADP-dependent; Belongs to the aldehyde dehydrogenase family.
   
  0.766
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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