MPLA_140280 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_140280

Iron-containing alcohol dehydrogenase. (390 aa)

Predicted Functional Partners:

MPLA_140279

0.941

adhC

0.880

MPLA_1390081

0.831

MPLA_320095

0.831

adhA

0.831

gltB

0.788

maeB

0.769

maeB-2

0.769

MPLA_340130

0.736

MPLA_670021

0.733

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1390081	MPLA_140280	MPLA_1390081	MPLA_140280	ADH_zinc_N domain-containing protein.	Iron-containing alcohol dehydrogenase.	0.831
MPLA_1390081	MPLA_670021	MPLA_1390081	MPLA_670021	ADH_zinc_N domain-containing protein.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.664
MPLA_1390081	adhA	MPLA_1390081	MPLA_830040	ADH_zinc_N domain-containing protein.	Putative alcohol dehydrogenase AdhA.	0.604
MPLA_1390081	adhC	MPLA_1390081	MPLA_280009	ADH_zinc_N domain-containing protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.863
MPLA_1390081	maeB	MPLA_1390081	MPLA_50008	ADH_zinc_N domain-containing protein.	Putative fused malic enzyme oxidoreductase phosphotransacetylase.	0.509
MPLA_1390081	maeB-2	MPLA_1390081	MPLA_630023	ADH_zinc_N domain-containing protein.	Putative fused malic enzyme oxidoreductase phosphotransacetylase.	0.509
MPLA_140279	MPLA_140280	MPLA_140279	MPLA_140280	Belongs to the aldehyde dehydrogenase family.	Iron-containing alcohol dehydrogenase.	0.941
MPLA_140279	MPLA_340130	MPLA_140279	MPLA_340130	Belongs to the aldehyde dehydrogenase family.	Indolepyruvate ferredoxin oxidoreductase.	0.574
MPLA_140279	MPLA_670021	MPLA_140279	MPLA_670021	Belongs to the aldehyde dehydrogenase family.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.665
MPLA_140279	adhC	MPLA_140279	MPLA_280009	Belongs to the aldehyde dehydrogenase family.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.467
MPLA_140279	gltB	MPLA_140279	MPLA_140317	Belongs to the aldehyde dehydrogenase family.	Glutamate synthase, large subunit.	0.748
MPLA_140279	maeB	MPLA_140279	MPLA_50008	Belongs to the aldehyde dehydrogenase family.	Putative fused malic enzyme oxidoreductase phosphotransacetylase.	0.596
MPLA_140279	maeB-2	MPLA_140279	MPLA_630023	Belongs to the aldehyde dehydrogenase family.	Putative fused malic enzyme oxidoreductase phosphotransacetylase.	0.596
MPLA_140280	MPLA_1390081	MPLA_140280	MPLA_1390081	Iron-containing alcohol dehydrogenase.	ADH_zinc_N domain-containing protein.	0.831
MPLA_140280	MPLA_140279	MPLA_140280	MPLA_140279	Iron-containing alcohol dehydrogenase.	Belongs to the aldehyde dehydrogenase family.	0.941
MPLA_140280	MPLA_320095	MPLA_140280	MPLA_320095	Iron-containing alcohol dehydrogenase.	Alcohol dehydrogenase.	0.831
MPLA_140280	MPLA_340130	MPLA_140280	MPLA_340130	Iron-containing alcohol dehydrogenase.	Indolepyruvate ferredoxin oxidoreductase.	0.736
MPLA_140280	MPLA_670021	MPLA_140280	MPLA_670021	Iron-containing alcohol dehydrogenase.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.733
MPLA_140280	adhA	MPLA_140280	MPLA_830040	Iron-containing alcohol dehydrogenase.	Putative alcohol dehydrogenase AdhA.	0.831
MPLA_140280	adhC	MPLA_140280	MPLA_280009	Iron-containing alcohol dehydrogenase.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.880