MPLA_140290 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_140290

Stress-response A/B barrel domain-containing protein. (105 aa)

Predicted Functional Partners:

MPLA_140293

0.813

MPLA_140292

0.809

betA-2

0.804

MPLA_140295

0.696

MPLA_140300

0.684

MPLA_140296

0.665

MPLA_140050

0.614

MPLA_670021

0.611

MPLA_1100019

0.606

yeaX

0.606

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1100019	MPLA_140290	MPLA_1100019	MPLA_140290	Ferredoxin.	Stress-response A/B barrel domain-containing protein.	0.606
MPLA_1100019	MPLA_140292	MPLA_1100019	MPLA_140292	Ferredoxin.	Short-chain dehydrogenase/reductase SDR.	0.530
MPLA_1100019	MPLA_140293	MPLA_1100019	MPLA_140293	Ferredoxin.	Glucose-methanol-choline oxidoreductase.	0.612
MPLA_1100019	MPLA_670021	MPLA_1100019	MPLA_670021	Ferredoxin.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.846
MPLA_1100019	betA-2	MPLA_1100019	MPLA_140291	Ferredoxin.	Choline dehydrogenase, a flavoprotein.	0.612
MPLA_1100019	yeaX	MPLA_1100019	MPLA_660032	Ferredoxin.	Putative dioxygenase subunit.	0.627
MPLA_140050	MPLA_140290	MPLA_140050	MPLA_140290	Putative aldolase.	Stress-response A/B barrel domain-containing protein.	0.614
MPLA_140290	MPLA_1100019	MPLA_140290	MPLA_1100019	Stress-response A/B barrel domain-containing protein.	Ferredoxin.	0.606
MPLA_140290	MPLA_140050	MPLA_140290	MPLA_140050	Stress-response A/B barrel domain-containing protein.	Putative aldolase.	0.614
MPLA_140290	MPLA_140292	MPLA_140290	MPLA_140292	Stress-response A/B barrel domain-containing protein.	Short-chain dehydrogenase/reductase SDR.	0.809
MPLA_140290	MPLA_140293	MPLA_140290	MPLA_140293	Stress-response A/B barrel domain-containing protein.	Glucose-methanol-choline oxidoreductase.	0.813
MPLA_140290	MPLA_140295	MPLA_140290	MPLA_140295	Stress-response A/B barrel domain-containing protein.	Binding-protein-dependent transport systems inner membrane component.	0.696
MPLA_140290	MPLA_140296	MPLA_140290	MPLA_140296	Stress-response A/B barrel domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.665
MPLA_140290	MPLA_140300	MPLA_140290	MPLA_140300	Stress-response A/B barrel domain-containing protein.	Acetate CoA-transferase YdiF; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.	0.684
MPLA_140290	MPLA_670021	MPLA_140290	MPLA_670021	Stress-response A/B barrel domain-containing protein.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.611
MPLA_140290	betA-2	MPLA_140290	MPLA_140291	Stress-response A/B barrel domain-containing protein.	Choline dehydrogenase, a flavoprotein.	0.804
MPLA_140290	yeaX	MPLA_140290	MPLA_660032	Stress-response A/B barrel domain-containing protein.	Putative dioxygenase subunit.	0.606
MPLA_140292	MPLA_1100019	MPLA_140292	MPLA_1100019	Short-chain dehydrogenase/reductase SDR.	Ferredoxin.	0.530
MPLA_140292	MPLA_140290	MPLA_140292	MPLA_140290	Short-chain dehydrogenase/reductase SDR.	Stress-response A/B barrel domain-containing protein.	0.809
MPLA_140292	MPLA_140293	MPLA_140292	MPLA_140293	Short-chain dehydrogenase/reductase SDR.	Glucose-methanol-choline oxidoreductase.	0.871