betA-2 protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

betA-2

Choline dehydrogenase, a flavoprotein. (542 aa)

Predicted Functional Partners:

MPLA_140292

0.839

MPLA_140293

0.813

MPLA_230034

0.806

MPLA_140290

0.804

MPLA_1620047

0.680

MPLA_340150

0.680

MPLA_930007

0.680

MPLA_670021

0.649

MPLA_580001

0.629

MPLA_1390173

0.615

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1390173	MPLA_140292	MPLA_1390173	MPLA_140292	Adenylate cyclase.	Short-chain dehydrogenase/reductase SDR.	0.427
MPLA_1390173	MPLA_140293	MPLA_1390173	MPLA_140293	Adenylate cyclase.	Glucose-methanol-choline oxidoreductase.	0.665
MPLA_1390173	MPLA_1620047	MPLA_1390173	MPLA_1620047	Adenylate cyclase.	Uncharacterized protein.	0.798
MPLA_1390173	MPLA_230034	MPLA_1390173	MPLA_230034	Adenylate cyclase.	ANK_REP_REGION domain-containing protein.	0.867
MPLA_1390173	MPLA_340150	MPLA_1390173	MPLA_340150	Adenylate cyclase.	Uncharacterized protein.	0.798
MPLA_1390173	MPLA_670021	MPLA_1390173	MPLA_670021	Adenylate cyclase.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.690
MPLA_1390173	MPLA_930007	MPLA_1390173	MPLA_930007	Adenylate cyclase.	WD-repeart protein, beta transducin-like.	0.817
MPLA_1390173	betA-2	MPLA_1390173	MPLA_140291	Adenylate cyclase.	Choline dehydrogenase, a flavoprotein.	0.615
MPLA_140290	MPLA_140292	MPLA_140290	MPLA_140292	Stress-response A/B barrel domain-containing protein.	Short-chain dehydrogenase/reductase SDR.	0.809
MPLA_140290	MPLA_140293	MPLA_140290	MPLA_140293	Stress-response A/B barrel domain-containing protein.	Glucose-methanol-choline oxidoreductase.	0.813
MPLA_140290	MPLA_670021	MPLA_140290	MPLA_670021	Stress-response A/B barrel domain-containing protein.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.611
MPLA_140290	betA-2	MPLA_140290	MPLA_140291	Stress-response A/B barrel domain-containing protein.	Choline dehydrogenase, a flavoprotein.	0.804
MPLA_140292	MPLA_1390173	MPLA_140292	MPLA_1390173	Short-chain dehydrogenase/reductase SDR.	Adenylate cyclase.	0.427
MPLA_140292	MPLA_140290	MPLA_140292	MPLA_140290	Short-chain dehydrogenase/reductase SDR.	Stress-response A/B barrel domain-containing protein.	0.809
MPLA_140292	MPLA_140293	MPLA_140292	MPLA_140293	Short-chain dehydrogenase/reductase SDR.	Glucose-methanol-choline oxidoreductase.	0.871
MPLA_140292	MPLA_1620047	MPLA_140292	MPLA_1620047	Short-chain dehydrogenase/reductase SDR.	Uncharacterized protein.	0.480
MPLA_140292	MPLA_230034	MPLA_140292	MPLA_230034	Short-chain dehydrogenase/reductase SDR.	ANK_REP_REGION domain-containing protein.	0.677
MPLA_140292	MPLA_340150	MPLA_140292	MPLA_340150	Short-chain dehydrogenase/reductase SDR.	Uncharacterized protein.	0.480
MPLA_140292	MPLA_670021	MPLA_140292	MPLA_670021	Short-chain dehydrogenase/reductase SDR.	Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.556
MPLA_140292	MPLA_930007	MPLA_140292	MPLA_930007	Short-chain dehydrogenase/reductase SDR.	WD-repeart protein, beta transducin-like.	0.485