MPLA_150001 protein (Mesorhizobium sp. ORS3359)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MPLA_150001

Uncharacterized protein. (103 aa)

Predicted Functional Partners:

MPLA_150003

0.780

MPLA_150002

0.778

MPLA_1190079

0.574

MPLA_180060

0.562

MPLA_1800170

0.555

MPLA_720051

0.547

MPLA_150004

0.491

MPLA_230068

0.476

MPLA_1800153

0.442

MPLA_1700027

0.439

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MPLA_1190079	MPLA_150001	ParB domain protein nuclease.	Uncharacterized protein.	0.574
MPLA_150001	MPLA_1190079	Uncharacterized protein.	ParB domain protein nuclease.	0.574
MPLA_150001	MPLA_150002	Uncharacterized protein.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.778
MPLA_150001	MPLA_150003	Uncharacterized protein.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.780
MPLA_150001	MPLA_150004	Uncharacterized protein.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.491
MPLA_150001	MPLA_1700027	Uncharacterized protein.	Multi antimicrobial extrusion protein MatE.	0.439
MPLA_150001	MPLA_1800153	Uncharacterized protein.	Uncharacterized protein.	0.442
MPLA_150001	MPLA_1800170	Uncharacterized protein.	Uncharacterized protein.	0.555
MPLA_150001	MPLA_180060	Uncharacterized protein.	Uncharacterized protein.	0.562
MPLA_150001	MPLA_230068	Uncharacterized protein.	O-antigen polymerase.	0.476
MPLA_150001	MPLA_720051	Uncharacterized protein.	Acyltransferase 3.	0.547
MPLA_150002	MPLA_150001	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized protein.	0.778
MPLA_150002	MPLA_150003	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.913
MPLA_150002	MPLA_150004	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.916
MPLA_150003	MPLA_150001	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized protein.	0.780
MPLA_150003	MPLA_150002	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.913
MPLA_150003	MPLA_150004	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.506
MPLA_150004	MPLA_150001	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized protein.	0.491
MPLA_150004	MPLA_150002	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.916
MPLA_150004	MPLA_150003	Uncharacterized ABC transporter ATP-binding protein HI_1051.	Uncharacterized ABC transporter ATP-binding protein HI_1051.	0.506