Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_160009YCII-like protein. (151 aa)    
Predicted Functional Partners:
MPLA_160103
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family.
 
     0.777
MPLA_380001
Sigma70_r2 domain-containing protein; Belongs to the sigma-70 factor family.
 
     0.770
MPLA_1200002
YCII-related protein.
  
     0.761
ompR
DNA-binding response regulator in two-component regulatory system with EnvZ.
       0.741
MPLA_160008
Integral membrane sensor signal transduction histidine kinase.
       0.741
MPLA_1280003
YCII domain-containing protein.
  
     0.727
MPLA_160005
Uncharacterized protein.
       0.532
MPLA_160006
Uncharacterized protein.
       0.532
MPLA_180053
Uncharacterized protein.
  
     0.415
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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