STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_160103RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. (424 aa)    
Predicted Functional Partners:
MPLA_160104
YCII domain-containing protein.
 
    0.957
MPLA_1200002
YCII-related protein.
 
    0.795
MPLA_490003
YCII domain-containing protein.
 
    0.795
MPLA_1280003
YCII domain-containing protein.
 
     0.790
MPLA_160009
YCII-like protein.
 
     0.777
MPLA_160105
DNA topoisomerase.
       0.513
MPLA_810050
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.458
MPLA_160102
Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.
       0.451
MPLA_160110
Alpha-E domain-containing protein.
 
     0.405
MPLA_160106
Uncharacterized protein.
       0.404
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.