Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MPLA_1170049 | MPLA_160105 | MPLA_1170049 | MPLA_160105 | RF_PROK_I domain-containing protein. | DNA topoisomerase. | 0.698 |
MPLA_1200011 | MPLA_160105 | MPLA_1200011 | MPLA_160105 | DNA ligase D. | DNA topoisomerase. | 0.738 |
MPLA_1200011 | MPLA_1850053 | MPLA_1200011 | MPLA_1850053 | DNA ligase D. | ATP-dependent DNA ligase. | 0.641 |
MPLA_1200011 | MPLA_1870017 | MPLA_1200011 | MPLA_1870017 | DNA ligase D. | DNA_LIGASE_A3 domain-containing protein. | 0.694 |
MPLA_1200011 | MPLA_2130012 | MPLA_1200011 | MPLA_2130012 | DNA ligase D. | DNA ligase D. | 0.645 |
MPLA_160105 | MPLA_1170049 | MPLA_160105 | MPLA_1170049 | DNA topoisomerase. | RF_PROK_I domain-containing protein. | 0.698 |
MPLA_160105 | MPLA_1200011 | MPLA_160105 | MPLA_1200011 | DNA topoisomerase. | DNA ligase D. | 0.738 |
MPLA_160105 | MPLA_1850053 | MPLA_160105 | MPLA_1850053 | DNA topoisomerase. | ATP-dependent DNA ligase. | 0.757 |
MPLA_160105 | MPLA_1870017 | MPLA_160105 | MPLA_1870017 | DNA topoisomerase. | DNA_LIGASE_A3 domain-containing protein. | 0.713 |
MPLA_160105 | MPLA_2130012 | MPLA_160105 | MPLA_2130012 | DNA topoisomerase. | DNA ligase D. | 0.741 |
MPLA_160105 | gyrB | MPLA_160105 | MPLA_340122 | DNA topoisomerase. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.968 |
MPLA_160105 | parE | MPLA_160105 | MPLA_290012 | DNA topoisomerase. | DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.968 |
MPLA_160105 | prfB | MPLA_160105 | MPLA_230001 | DNA topoisomerase. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.698 |
MPLA_160105 | recQ | MPLA_160105 | MPLA_570029 | DNA topoisomerase. | ATP-dependent DNA helicase. | 0.968 |
MPLA_160105 | rnhB | MPLA_160105 | MPLA_1780001 | DNA topoisomerase. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.954 |
MPLA_1850053 | MPLA_1200011 | MPLA_1850053 | MPLA_1200011 | ATP-dependent DNA ligase. | DNA ligase D. | 0.641 |
MPLA_1850053 | MPLA_160105 | MPLA_1850053 | MPLA_160105 | ATP-dependent DNA ligase. | DNA topoisomerase. | 0.757 |
MPLA_1850053 | MPLA_1870017 | MPLA_1850053 | MPLA_1870017 | ATP-dependent DNA ligase. | DNA_LIGASE_A3 domain-containing protein. | 0.691 |
MPLA_1850053 | MPLA_2130012 | MPLA_1850053 | MPLA_2130012 | ATP-dependent DNA ligase. | DNA ligase D. | 0.658 |
MPLA_1870017 | MPLA_1200011 | MPLA_1870017 | MPLA_1200011 | DNA_LIGASE_A3 domain-containing protein. | DNA ligase D. | 0.694 |
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