MPLA_1610004 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1610004

Extracellular solute-binding protein family 5. (536 aa)

Predicted Functional Partners:

MPLA_1610002

0.954

MPLA_1610003

0.926

MPLA_520034

0.920

MPLA_720063

0.920

MPLA_1500018

0.915

MPLA_320134

0.914

MPLA_780003

0.908

cysA

0.902

MPLA_100039

0.896

MPLA_1070021

0.896

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_100039	MPLA_1070021	MPLA_100039	MPLA_1070021	Extracellular solute-binding protein family 5.	Transport permease protein.	0.896
MPLA_100039	MPLA_1500018	MPLA_100039	MPLA_1500018	Extracellular solute-binding protein family 5.	ABC transporter, periplasmic oligopeptide-binding protein.	0.896
MPLA_100039	MPLA_1610002	MPLA_100039	MPLA_1610002	Extracellular solute-binding protein family 5.	Putative peptide ABC transporter permease protein y4tQ.	0.609
MPLA_100039	MPLA_1610003	MPLA_100039	MPLA_1610003	Extracellular solute-binding protein family 5.	Binding-protein-dependent transport systems inner membrane component.	0.623
MPLA_100039	MPLA_1610004	MPLA_100039	MPLA_1610004	Extracellular solute-binding protein family 5.	Extracellular solute-binding protein family 5.	0.896
MPLA_100039	MPLA_320134	MPLA_100039	MPLA_320134	Extracellular solute-binding protein family 5.	Extracellular solute-binding protein family 5.	0.896
MPLA_100039	MPLA_520034	MPLA_100039	MPLA_520034	Extracellular solute-binding protein family 5.	Uncharacterized protein.	0.896
MPLA_100039	MPLA_720063	MPLA_100039	MPLA_720063	Extracellular solute-binding protein family 5.	Extracellular solute-binding protein family 1.	0.896
MPLA_100039	MPLA_780003	MPLA_100039	MPLA_780003	Extracellular solute-binding protein family 5.	Putative dipeptide ABC transporter (Substrate-binding protein).	0.896
MPLA_100039	cysA	MPLA_100039	MPLA_100030	Extracellular solute-binding protein family 5.	Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.916
MPLA_1070021	MPLA_100039	MPLA_1070021	MPLA_100039	Transport permease protein.	Extracellular solute-binding protein family 5.	0.896
MPLA_1070021	MPLA_1500018	MPLA_1070021	MPLA_1500018	Transport permease protein.	ABC transporter, periplasmic oligopeptide-binding protein.	0.896
MPLA_1070021	MPLA_1610004	MPLA_1070021	MPLA_1610004	Transport permease protein.	Extracellular solute-binding protein family 5.	0.896
MPLA_1070021	MPLA_320134	MPLA_1070021	MPLA_320134	Transport permease protein.	Extracellular solute-binding protein family 5.	0.896
MPLA_1070021	MPLA_520034	MPLA_1070021	MPLA_520034	Transport permease protein.	Uncharacterized protein.	0.896
MPLA_1070021	MPLA_720063	MPLA_1070021	MPLA_720063	Transport permease protein.	Extracellular solute-binding protein family 1.	0.896
MPLA_1070021	MPLA_780003	MPLA_1070021	MPLA_780003	Transport permease protein.	Putative dipeptide ABC transporter (Substrate-binding protein).	0.896
MPLA_1070021	cysA	MPLA_1070021	MPLA_100030	Transport permease protein.	Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.896
MPLA_1500018	MPLA_100039	MPLA_1500018	MPLA_100039	ABC transporter, periplasmic oligopeptide-binding protein.	Extracellular solute-binding protein family 5.	0.896
MPLA_1500018	MPLA_1070021	MPLA_1500018	MPLA_1070021	ABC transporter, periplasmic oligopeptide-binding protein.	Transport permease protein.	0.896