ugpC-7 protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ugpC-7

Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily. (367 aa)

Predicted Functional Partners:

yurJ

0.977

MPLA_1610013

0.952

MPLA_1390066

0.939

MPLA_520034

0.939

MPLA_720063

0.939

MPLA_1610014

0.935

potG-7

0.913

MPLA_1150016

0.911

potG

0.911

ydcT-2

0.911

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1150016	MPLA_1390066	MPLA_1150016	MPLA_1390066	Binding-protein-dependent transport systems inner membrane component.	Family 1 extracellular solute-binding protein.	0.711
MPLA_1150016	MPLA_1610014	MPLA_1150016	MPLA_1610014	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.750
MPLA_1150016	MPLA_520034	MPLA_1150016	MPLA_520034	Binding-protein-dependent transport systems inner membrane component.	Uncharacterized protein.	0.709
MPLA_1150016	MPLA_720063	MPLA_1150016	MPLA_720063	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein family 1.	0.661
MPLA_1150016	potG	MPLA_1150016	MPLA_1280097	Binding-protein-dependent transport systems inner membrane component.	Putrescine transporter subunit: ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.	0.459
MPLA_1150016	potG-7	MPLA_1150016	MPLA_90102	Binding-protein-dependent transport systems inner membrane component.	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.459
MPLA_1150016	ugpC-7	MPLA_1150016	MPLA_1610016	Binding-protein-dependent transport systems inner membrane component.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.911
MPLA_1150016	ydcT-2	MPLA_1150016	MPLA_620001	Binding-protein-dependent transport systems inner membrane component.	Belongs to the ABC transporter superfamily.	0.459
MPLA_1150016	yurJ	MPLA_1150016	MPLA_1610017	Binding-protein-dependent transport systems inner membrane component.	Uncharacterized ABC transporter ATP-binding protein YurJ; Belongs to the ABC transporter superfamily.	0.911
MPLA_1390066	MPLA_1150016	MPLA_1390066	MPLA_1150016	Family 1 extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.711
MPLA_1390066	MPLA_1610013	MPLA_1390066	MPLA_1610013	Family 1 extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.661
MPLA_1390066	MPLA_1610014	MPLA_1390066	MPLA_1610014	Family 1 extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.652
MPLA_1390066	MPLA_520034	MPLA_1390066	MPLA_520034	Family 1 extracellular solute-binding protein.	Uncharacterized protein.	0.896
MPLA_1390066	MPLA_720063	MPLA_1390066	MPLA_720063	Family 1 extracellular solute-binding protein.	Extracellular solute-binding protein family 1.	0.913
MPLA_1390066	potG	MPLA_1390066	MPLA_1280097	Family 1 extracellular solute-binding protein.	Putrescine transporter subunit: ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.	0.884
MPLA_1390066	potG-7	MPLA_1390066	MPLA_90102	Family 1 extracellular solute-binding protein.	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.865
MPLA_1390066	ugpC-7	MPLA_1390066	MPLA_1610016	Family 1 extracellular solute-binding protein.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.939
MPLA_1390066	ydcT-2	MPLA_1390066	MPLA_620001	Family 1 extracellular solute-binding protein.	Belongs to the ABC transporter superfamily.	0.884
MPLA_1390066	yurJ	MPLA_1390066	MPLA_1610017	Family 1 extracellular solute-binding protein.	Uncharacterized ABC transporter ATP-binding protein YurJ; Belongs to the ABC transporter superfamily.	0.939
MPLA_1610013	MPLA_1390066	MPLA_1610013	MPLA_1390066	Binding-protein-dependent transport systems inner membrane component.	Family 1 extracellular solute-binding protein.	0.661