Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MPLA_1160006 | MPLA_1620051 | MPLA_1160006 | MPLA_1620051 | Uncharacterized protein. | DNA helicase. | 0.733 |
MPLA_1160006 | MPLA_250062 | MPLA_1160006 | MPLA_250062 | Uncharacterized protein. | DNA helicase. | 0.733 |
MPLA_1160006 | dnaN | MPLA_1160006 | MPLA_810019 | Uncharacterized protein. | Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] | 0.957 |
MPLA_1160006 | polA | MPLA_1160006 | MPLA_1620036 | Uncharacterized protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.993 |
MPLA_1160006 | recA | MPLA_1160006 | MPLA_30094 | Uncharacterized protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.763 |
MPLA_1160006 | recQ | MPLA_1160006 | MPLA_570029 | Uncharacterized protein. | ATP-dependent DNA helicase. | 0.964 |
MPLA_1160006 | topA | MPLA_1160006 | MPLA_270008 | Uncharacterized protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.466 |
MPLA_1170060 | MPLA_1620051 | MPLA_1170060 | MPLA_1620051 | Double-strand break repair protein AddB. | DNA helicase. | 0.776 |
MPLA_1170060 | MPLA_250062 | MPLA_1170060 | MPLA_250062 | Double-strand break repair protein AddB. | DNA helicase. | 0.776 |
MPLA_1170060 | dnaN | MPLA_1170060 | MPLA_810019 | Double-strand break repair protein AddB. | Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] | 0.521 |
MPLA_1170060 | recQ | MPLA_1170060 | MPLA_570029 | Double-strand break repair protein AddB. | ATP-dependent DNA helicase. | 0.500 |
MPLA_1620051 | MPLA_1160006 | MPLA_1620051 | MPLA_1160006 | DNA helicase. | Uncharacterized protein. | 0.733 |
MPLA_1620051 | MPLA_1170060 | MPLA_1620051 | MPLA_1170060 | DNA helicase. | Double-strand break repair protein AddB. | 0.776 |
MPLA_1620051 | MPLA_250062 | MPLA_1620051 | MPLA_250062 | DNA helicase. | DNA helicase. | 0.731 |
MPLA_1620051 | dnaN | MPLA_1620051 | MPLA_810019 | DNA helicase. | Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] | 0.903 |
MPLA_1620051 | mutL | MPLA_1620051 | MPLA_720032 | DNA helicase. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.782 |
MPLA_1620051 | polA | MPLA_1620051 | MPLA_1620036 | DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.782 |
MPLA_1620051 | recA | MPLA_1620051 | MPLA_30094 | DNA helicase. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.959 |
MPLA_1620051 | recQ | MPLA_1620051 | MPLA_570029 | DNA helicase. | ATP-dependent DNA helicase. | 0.959 |
MPLA_1620051 | rpoB | MPLA_1620051 | MPLA_1820011 | DNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.810 |
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