MPLA_1620086 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1620086

ANF_receptor domain-containing protein. (445 aa)

Predicted Functional Partners:

MPLA_1840018

0.737

MPLA_1100041

0.706

MPLA_1190121

0.706

MPLA_1390122

0.706

MPLA_140173

0.706

MPLA_580014

0.706

MPLA_1060009

0.697

MPLA_1320016

0.681

MPLA_1620087

0.678

MPLA_140271

0.673

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MPLA_1060009	MPLA_1100041	Tad domain-containing protein.	Uncharacterized protein.	0.772
MPLA_1060009	MPLA_1320016	Tad domain-containing protein.	Uncharacterized protein.	0.771
MPLA_1060009	MPLA_140271	Tad domain-containing protein.	GtrA family protein.	0.709
MPLA_1060009	MPLA_1620086	Tad domain-containing protein.	ANF_receptor domain-containing protein.	0.697
MPLA_1100041	MPLA_1060009	Uncharacterized protein.	Tad domain-containing protein.	0.772
MPLA_1100041	MPLA_1320016	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1100041	MPLA_140271	Uncharacterized protein.	GtrA family protein.	0.752
MPLA_1100041	MPLA_1620086	Uncharacterized protein.	ANF_receptor domain-containing protein.	0.706
MPLA_1190121	MPLA_1390122	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.772
MPLA_1190121	MPLA_1620086	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	ANF_receptor domain-containing protein.	0.706
MPLA_1190121	MPLA_1840018	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	Urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.	0.857
MPLA_1320016	MPLA_1060009	Uncharacterized protein.	Tad domain-containing protein.	0.771
MPLA_1320016	MPLA_1100041	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1320016	MPLA_140271	Uncharacterized protein.	GtrA family protein.	0.744
MPLA_1320016	MPLA_1620086	Uncharacterized protein.	ANF_receptor domain-containing protein.	0.681
MPLA_1390122	MPLA_1190121	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.772
MPLA_1390122	MPLA_1620086	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	ANF_receptor domain-containing protein.	0.706
MPLA_1390122	MPLA_1840018	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	Urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.	0.921
MPLA_140173	MPLA_1620086	ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.	ANF_receptor domain-containing protein.	0.706
MPLA_140173	MPLA_1840018	ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.	Urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.	0.931