MPLA_1650140 protein (Mesorhizobium sp. ORS3359)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MPLA_1650140

Uncharacterized protein. (237 aa)

Predicted Functional Partners:

lptB

0.990

MPLA_1650141

0.971

lptD

0.720

MPLA_1010006

0.679

MPLA_1550026

0.654

MPLA_310028

0.646

omp2b

0.642

omp2b-3

0.642

omp2b-2

0.635

MPLA_1650146

0.604

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1010006	MPLA_1550026	MPLA_1010006	MPLA_1550026	Uncharacterized protein.	Uncharacterized protein.	0.747
MPLA_1010006	MPLA_1650140	MPLA_1010006	MPLA_1650140	Uncharacterized protein.	Uncharacterized protein.	0.679
MPLA_1010006	MPLA_1650141	MPLA_1010006	MPLA_1650141	Uncharacterized protein.	OstA-like_N domain-containing protein.	0.450
MPLA_1010006	MPLA_1650146	MPLA_1010006	MPLA_1650146	Uncharacterized protein.	Uncharacterized protein.	0.765
MPLA_1010006	lptD	MPLA_1010006	MPLA_1270005	Uncharacterized protein.	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.505
MPLA_1010006	omp2b	MPLA_1010006	MPLA_1210001	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.756
MPLA_1010006	omp2b-2	MPLA_1010006	MPLA_1410021	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.749
MPLA_1010006	omp2b-3	MPLA_1010006	MPLA_630022	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.745
MPLA_1550026	MPLA_1010006	MPLA_1550026	MPLA_1010006	Uncharacterized protein.	Uncharacterized protein.	0.747
MPLA_1550026	MPLA_1650140	MPLA_1550026	MPLA_1650140	Uncharacterized protein.	Uncharacterized protein.	0.654
MPLA_1550026	MPLA_1650141	MPLA_1550026	MPLA_1650141	Uncharacterized protein.	OstA-like_N domain-containing protein.	0.451
MPLA_1550026	MPLA_1650146	MPLA_1550026	MPLA_1650146	Uncharacterized protein.	Uncharacterized protein.	0.708
MPLA_1550026	MPLA_310028	MPLA_1550026	MPLA_310028	Uncharacterized protein.	Sporulation domain-containing protein.	0.675
MPLA_1550026	lptD	MPLA_1550026	MPLA_1270005	Uncharacterized protein.	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.699
MPLA_1550026	omp2b	MPLA_1550026	MPLA_1210001	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.770
MPLA_1550026	omp2b-2	MPLA_1550026	MPLA_1410021	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.770
MPLA_1550026	omp2b-3	MPLA_1550026	MPLA_630022	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.770
MPLA_1650140	MPLA_1010006	MPLA_1650140	MPLA_1010006	Uncharacterized protein.	Uncharacterized protein.	0.679
MPLA_1650140	MPLA_1550026	MPLA_1650140	MPLA_1550026	Uncharacterized protein.	Uncharacterized protein.	0.654
MPLA_1650140	MPLA_1650141	MPLA_1650140	MPLA_1650141	Uncharacterized protein.	OstA-like_N domain-containing protein.	0.971