MPLA_1650159 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_1650159

Uncharacterized protein. (164 aa)

Predicted Functional Partners:

nth

0.709

MPLA_1800059

0.682

MPLA_270010

0.656

MPLA_80026

0.650

MPLA_180048

0.563

regB

0.539

MPLA_220016

0.538

MPLA_1650118

0.522

MPLA_220047

0.457

MPLA_30134

0.457

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1650118	MPLA_1650159	MPLA_1650118	MPLA_1650159	Uncharacterized protein.	Uncharacterized protein.	0.522
MPLA_1650159	MPLA_1650118	MPLA_1650159	MPLA_1650118	Uncharacterized protein.	Uncharacterized protein.	0.522
MPLA_1650159	MPLA_1800059	MPLA_1650159	MPLA_1800059	Uncharacterized protein.	Uncharacterized protein.	0.682
MPLA_1650159	MPLA_180048	MPLA_1650159	MPLA_180048	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.563
MPLA_1650159	MPLA_220016	MPLA_1650159	MPLA_220016	Uncharacterized protein.	Uncharacterized protein.	0.538
MPLA_1650159	MPLA_220047	MPLA_1650159	MPLA_220047	Uncharacterized protein.	Uncharacterized protein.	0.457
MPLA_1650159	MPLA_270010	MPLA_1650159	MPLA_270010	Uncharacterized protein.	Uncharacterized protein.	0.656
MPLA_1650159	MPLA_30134	MPLA_1650159	MPLA_30134	Uncharacterized protein.	MoCF_biosynth domain-containing protein.	0.457
MPLA_1650159	MPLA_80026	MPLA_1650159	MPLA_80026	Uncharacterized protein.	Uncharacterized protein.	0.650
MPLA_1650159	nth	MPLA_1650159	MPLA_1650160	Uncharacterized protein.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.709
MPLA_1650159	regB	MPLA_1650159	MPLA_640013	Uncharacterized protein.	Sensor histidine kinase RegB.	0.539
MPLA_1800059	MPLA_1650159	MPLA_1800059	MPLA_1650159	Uncharacterized protein.	Uncharacterized protein.	0.682
MPLA_1800059	regB	MPLA_1800059	MPLA_640013	Uncharacterized protein.	Sensor histidine kinase RegB.	0.447
MPLA_180048	MPLA_1650159	MPLA_180048	MPLA_1650159	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.563
MPLA_180048	MPLA_220047	MPLA_180048	MPLA_220047	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.711
MPLA_220016	MPLA_1650159	MPLA_220016	MPLA_1650159	Uncharacterized protein.	Uncharacterized protein.	0.538
MPLA_220047	MPLA_1650159	MPLA_220047	MPLA_1650159	Uncharacterized protein.	Uncharacterized protein.	0.457
MPLA_220047	MPLA_180048	MPLA_220047	MPLA_180048	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.711
MPLA_270010	MPLA_1650159	MPLA_270010	MPLA_1650159	Uncharacterized protein.	Uncharacterized protein.	0.656
MPLA_270010	regB	MPLA_270010	MPLA_640013	Uncharacterized protein.	Sensor histidine kinase RegB.	0.500